Paralogue Annotation for CACNA1C residue 408

Residue details

Gene: CACNA1C
Reference Sequences: LRG: LRG_334, Ensembl variant: ENST00000399655 / ENSP00000382563
Amino Acid Position: 408
Reference Amino Acid: F - Phenylalanine
Protein Domain: Interdomain Linker I-II


Paralogue Variants mapped to CACNA1C residue 408

ParalogueVariantAssociated DiseaseMapping QualityConsensusPubmed
CACNA1AF363SHemiplegic migraineHigh9 20837964
SCN1AY426NMyoclonic epilepsy of infancyMedium9 12821740, 17054685, 26648591
SCN1AY426CDravet syndromeMedium9 18930999, 23195492

To assess whether the paralogue annotation here confidently predicts that variation at this residue is pathogenic, it is important to check the reports in the Pubmed links above to ascertain that the mutations in these paralogues have been proved likely to be disease-causing. It is also important to check that the direction of effect of the variant in the paralogue is compatible with your observed phenotype in CACNA1C.



CACNA1CRDWPWIYFVTLIIIGSFFVLNLVLGVLSGE>F<SKEREKAKARGDFQKLREKQQLEEDLKG--436
CACNA1ANTWNWLYFIPLIIIGSFFMLNLVLGVLSGE>F<AKERERVENRRAFLKLRRQQQIERELNG--391
CACNA1BNTWNWLYFIPLIIIGSFFMLNLVLGVLSGE>F<AKERERVENRRAFLKLRRQQQIERELNG--387
CACNA1DWEWPWVYFVSLIILGSFFVLNLVLGVLSGE>F<SKEREKAKARGDFQKLREKQQLEEDLKG--437
CACNA1EATWNWLYFIPLIIIGSFFVLNLVLGVLSGE>F<AKERERVENRRAFMKLRRQQQIERELNG--382
CACNA1FYELPWVYFVSLVIFGSFFVLNLVLGVLSGE>F<SKEREKAKARGDFQKQREKQQMEEDLRG--403
CACNA1GF-YNFIYFILLIIVGSFFMINLCLVVIATQ>F<SETKQRESQLMREQRVRFLSNASTLASFSE428
CACNA1HF-YNFIYFILLIIVGSFFMINLCLVVIATQ>F<SETKQRESQLMREQRARHLSNDSTLASFSE452
CACNA1IF-YNFIYFILLIIVGSFFMINLCLVVIATQ>F<SETKQREHRLMLEQRQRYLS-SSTVASYAE430
CACNA1SNEWPWIYFVTLILLGSFFILNLVLGVLSGE>F<TKEREKAKSRGTFQKLREKQQLDEDLRG--365
SCN10AKIY-MIFFVLVIFLGSFYLVNLILAVVTMA>Y<EEQNQATTDEIEAK-EKKFQEALEMLRK--427
SCN11ALYS-VFFFIVVIFLGSFYLINLTLAVVTMA>Y<EEQNKNVAAEIEAK-EKMFQEAQQLLKE--430
SCN1AKTY-MIFFVLVIFLGSFYLINLILAVVAMA>Y<EEQNQATLEEAEQK-EAEFQQMIEQLKK--453
SCN2AKTY-MIFFVLVIFLGSFYLINLILAVVAMA>Y<EEQNQATLEEAEQK-EAEFQQMLEQLKK--455
SCN3AKTY-MIFFVLVIFLGSFYLVNLILAVVAMA>Y<EEQNQATLEEAEQK-EAEFQQMLEQLKK--454
SCN4AKTY-MIFFVVIIFLGSFYLINLILAVVAMA>Y<AEQNEATLAEDKEK-EEEFQQMLEKFKK--477
SCN5AKIY-MIFFMLVIFLGSFYLVNLILAVVAMA>Y<EEQNQATIAETEEK-EKRFQEAMEMLKK--443
SCN7AKVY-MIFFVVVSFLFSFYMASLFLGILAMA>Y<EEEKQRVGEISKKI-EPKFQQTGKELQE--424
SCN8AKTY-MIFFVLVIFVGSFYLVNLILAVVAMA>Y<EEQNQATLEEAEQK-EAEFKAMLEQLKK--441
SCN9AKTY-MIFFVVVIFLGSFYLINLILAVVAMA>Y<EEQNQANIEEAKQK-ELEFQQMLDRLKK--432
cons                              > <                              

See full Alignment of Paralogues


Known Variants in CACNA1C

There are currently no reported variants at residue 408 for CACNA1C.