Paralogue Annotation for SCN5A residue 1069

Residue details

Gene: SCN5A
Reference Sequences: LRG: LRG_289, Ensembl variant: ENST00000333535 / ENSP00000328968
Amino Acid Position: 1069
Reference Amino Acid: T - Threonine
Protein Domain: Interdomain Linker II-III


Paralogue Variants mapped to SCN5A residue 1069

No paralogue variants have been mapped to residue 1069 for SCN5A.



SCN5A------------------------EENSLG>T<EEE-------------SSKQQESQPVS---1083
SCN1A------------------------DFSSES>D<LEE-------------SK---E--------1143
SCN2A------------------------EFSSES>D<MEE-------------SK---E--------1133
SCN3A------------------------EFSSES>E<LEE-------------SK---E--------1131
SCN4A------------------------ETDTFS>E<PED-------------SKKPPQ--------955
SCN7A------------------------EIQSKS>G<DGG-------------SK---E--------864
SCN8A------------------------DVSSES>D<PEG-------------SK---D--------1124
SCN9A------------------------ELSSDS>D<SEY-------------SK---V--------1106
SCN10AG-----------------E-----TWKDES>V<PQV-------------PA---E--------1076
SCN11A------------------------NAQRIT>Q<PEP-------------EQQAYEL-------949
CACNA1A------------------------------>-<--------RHGAPATYEGDARREDKERRHR1028
CACNA1B------------------------------>-<--------RARHKAQPAHEAVEKETT----998
CACNA1CENEDK----SPYPNP---ET-----TGEED>E<EEP---------------------------851
CACNA1DEDEDK----DPYPPC---DVPVGEEEEEEE>E<DEP---------------------------857
CACNA1E--------------EADTPL-----VLPHP>E<LEVGKHVVLTEQEPEGSSEQALLGNVQLD-1041
CACNA1FEEE-G----ARREGA---DMEEEEEEEEEE>E<EEE---------------------------822
CACNA1GGRLARALRPDD---P---PL-----DGDDA>D<DEG---------------------------1228
CACNA1HLPSDFFLRIDS---H---RE-----DAAEL>D<DDS---------------------------1246
CACNA1IIAKDVFTKMGD-------RG-----DRGED>E<EEI---------------------------1122
CACNA1SVNEVK----DPYPSA---DF-----PGDDE>E<DEP---------------------------750
cons                              > <                              

See full Alignment of Paralogues


Known Variants in SCN5A

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.T1069Mc.3206C>T Inherited ArrhythmiaLQTSSIFT: deleterious
Polyphen: probably damaging
ReportsInherited ArrhythmiaLQTS Compendium of cardiac channel mutations in 541 consecutive unrelated patients referred for long QT syndrome genetic testing. Heart Rhythm. 2005 2(5):507-17. 15840476
Inherited ArrhythmiaLQTS Spectrum and prevalence of mutations from the first 2,500 consecutive unrelated patients referred for the FAMILION long QT syndrome genetic test. Heart Rhythm. 2009 6(9):1297-303. 19716085
Inherited ArrhythmiaLQTS Genetic testing for long-QT syndrome: distinguishing pathogenic mutations from benign variants. Circulation. 2009 120(18):1752-60. 19841300