Paralogue Annotation for SCN5A residue 1180

Residue details

Gene: SCN5A
Reference Sequences: LRG: LRG_289, Ensembl variant: ENST00000333535 / ENSP00000328968
Amino Acid Position: 1180
Reference Amino Acid: A - Alanine
Protein Domain: Interdomain Linker II-III


Paralogue Variants mapped to SCN5A residue 1180

No paralogue variants have been mapped to residue 1180 for SCN5A.



SCN5A--------------EDCFTEGCVRR-CPCC>A<VDTTQAP---GKVWWRLRKTCYHIVEHSWF1207
SCN1A--------------EACFTEGCVQR-FKCC>Q<INVEEGR---GKQWWNLRRTCFRIVEHNWF1220
SCN2A--------------EACFTEDCVRK-FKCC>Q<ISIEEGK---GKLWWNLRKTCYKIVEHNWF1210
SCN3A--------------EACFTEGCIKK-FPFC>Q<VSTEEGK---GKIWWNLRKTCYSIVEHNWF1208
SCN4A--------------EECFTEACVQR-WPCL>Y<VDISQGR---GKKWWTLRRACFKIVEHNWF1033
SCN7A--------------SKHLKNGCRRG-SSLG>Q<ISGASKK---GKIWQNIRKTCCKIVENNWF936
SCN8A--------------DACFTEGCVQR-FKCC>Q<VNIEEGL---GKSWWILRKTCFLIVEHNWF1200
SCN9A--------------EACFTDGCVWR-FSCC>Q<VNIESGK---GKIWWNIRKTCYKIVEHSWF1183
SCN10A--------------DDCFTEGCIRH-CPCC>K<LDTTKSP---WDVGWQVRKTCYRIVEHSWF1154
SCN11A--------------ERCLPKGFGCC-FPCC>S<VDKRKPP---WVIWWNLRKTCYQIVKHSWF1058
CACNA1ANKNANPDPLPKKEEEKKEEEEDDRGEDGPK>-<PMPPYSSMFILSTTNPLRRLCHYILNLRYF1246
CACNA1BSGNVD---LESQAEGKKEVEADDVMRSGPR>-<PIVPYSSMFCLSPTNLLRRFCHYIVTMRYF1153
CACNA1C------H-----------------LKEKAV>-<PMPEASAFFIFSSNNRFRLQCHRIVNDTIF902
CACNA1D------N-----------------MKEKIA>-<PIPEGSAFFILSKTNPIRVGCHKLINHHIF908
CACNA1EEAEI----REDEEEVEKKKQKKEKRETG-K>-<AMVPHSSMFIFSTTNPIRRACHYIVNLRYF1155
CACNA1F------V-----------------PKEKVV>-<PIPEGSAFFCLSQTNPLRKGCHTLIHHHVF873
CACNA1G------R-----------------LP-ACC>L<ERDSWSAY-IFPPQSRFRLLCHRIITHKMF1278
CACNA1H------Y-----------------KP-QWC>R<SREAWALY-LFSPQNRFRVSCQKVITHKMF1296
CACNA1I------Y-----------------KP-DWC>E<VREDWSVY-LFSPENRFRVLCQTIIAHKLF1172
CACNA1S------Q-----------------LKEKAV>-<PIPEASSFFIFSPTNKIRVLCHRIVNATWF801
cons                              > <                              

See full Alignment of Paralogues


Known Variants in SCN5A

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.A1180Vc.3539C>T CardiomyopathyLQTSSIFT: deleterious
Polyphen: benign
ReportsOther Cardiac Phenotype Molecular and clinical characterization of a novel SCN5A mutation associated with atrioventricular block and dilated cardiomyopathy. Circ Arrhythm Electrophysiol. 2008 1(2):83-92. 19808398
Other Cardiac Phenotype A connexin40 mutation associated with a malignant variant of progressive familial heart block type I. Circ Arrhythm Electrophysiol. 2012 5(1):163-72. 22247482
Inherited ArrhythmiaLQTS The SCN5A Mutation A1180V is Associated With Electrocardiographic Features of LQT3. Pediatr Cardiol. 2013 23963187
CardiomyopathyDCM A1180V of cardiac sodium channel gene (SCN5A): is it a risk factor for dilated cardiomyopathy or just a common variant in Han Chinese? Dis Markers. 2013 35(5):531-5. doi: 10.1155/2013/659528. 24227891
CardiomyopathyLQTS Identification of Medically Actionable Secondary Findings in the 1000 Genomes. PLoS One. 2015 10(9):e0135193. doi: 10.1371/journal.pone.0135193. 26332594