Paralogue Annotation for SCN5A residue 1847

Residue details

Gene: SCN5A
Reference Sequences: LRG: LRG_289, Ensembl variant: ENST00000333535 / ENSP00000328968
Amino Acid Position: 1847
Reference Amino Acid: R - Arginine
Protein Domain: C-terminus


Paralogue Variants mapped to SCN5A residue 1847

ParalogueVariantAssociated DiseaseMapping QualityConsensusPubmed
SCN1AR1861WIntractable epilepsyHigh9 23195492

To assess whether the paralogue annotation here confidently predicts that variation at this residue is pathogenic, it is important to check the reports in the Pubmed links above to ascertain that the mutations in these paralogues have been proved likely to be disease-causing. It is also important to check that the direction of effect of the variant in the paralogue is compatible with your observed phenotype in SCN5A.



SCN5ALR--IAK--PNQI---SLINMDLPMVSGD->R<IHCMDILFAFTKRVLGES--G---EMDALK1872
SCN1ALN--LPQ--PNKL---QLIAMDLPMVSGD->R<IHCLDILFAFTKRVLGES--G---EMDALR1886
SCN2ALL--IAK--PNKV---QLIAMDLPMVSGD->R<IHCLDILFAFTKRVLGES--G---EMDALR1876
SCN3ALL--IAK--PNKV---QLIAMDLPMVSGD->R<IHCLDILFAFTKRVLGES--G---EMDALR1871
SCN4ALR--IAK--PNKI---KLITLDLPMVPGD->K<IHCLDILFALTKEVLGDS--G---EMDALK1698
SCN7ALF--MAK--PNKG---QLIALDLPMAVGD->R<IHCLDILLAFTKRVMGQD--V---RMEKVV1596
SCN8ALR--VPK--PNTI---ELIAMDLPMVSGD->R<IHCLDILFAFTKRVLGDS--G---ELDILR1866
SCN9ALL--IAK--PNKV---QLIAMDLPMVSGD->R<IHCLDILFAFTKRVLGES--G---EMDSLR1849
SCN10ALR--IPK--PNRN---ILIQMDLPLVPGD->K<IHCLDILFAFTKNVLGES--G---ELDSLK1822
SCN11ALR--VAK--PNKY---QFLVMDLPMVSED->R<LHCMDILFAFTARVLGGS--D---GLDSMK1704
CACNA1ALG--LGKKCPHRVACKRLLRMDLPVADD-N>T<VHFNSTLMALIRTALDIKIAKGGADKQQMD1920
CACNA1BLG--LGKKCPARVAYKRLVRMNMPISNEDM>T<VHFTSTLMALIRTALEIKLAPAGTKQHQCD1819
CACNA1CLG--FGKLCPHRVACKRLVSMNMPLNSDG->T<VMFNATLFALVRTALRIKTEG---NLEQAN1582
CACNA1DLG--FGKLCPHRVACKRLVAMNMPLNSDG->T<VMFNATLFALVRTALKIKTEG---NLEQAN1590
CACNA1ELG--LGKRCPSKVAYKRLVLMNMPVAED-M>T<VHFTSTLMALIRTALDIKIAKGGADRQQLD1832
CACNA1FLG--FGKLCPHRVACKRLVAMNMPLNSDG->T<VTFNATLFALVRTSLKIKTEG---NLEQAN1547
CACNA1GDS--PDSPKPGAL---------HPAAHA-R>S<ASHFSLEHPTDRQLFDTI---S--LLIQGS1942
CACNA1HLP--QESPG--AR--------DAPN----->-<---------LVARKV---------------1919
CACNA1IGGAGGGGDT--EG---GLCRRCYSPAQE-N>-<-LWLDSVSLIIKDSL---------------1814
CACNA1SLG--FGKFCPHRVACKRLVGMNMPLNSDG->T<VTFNATLFALVRTALKIKTEG---NFEQAN1487
cons                              > <                              

See full Alignment of Paralogues


Known Variants in SCN5A

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.R1847Hc.5540G>A Inherited ArrhythmiaBrSSIFT:
Polyphen:
ReportsInherited ArrhythmiaBrS Genetics can contribute to the prognosis of Brugada syndrome: a pilot model for risk stratification. Eur J Hum Genet. 2013 21(9):911-7. doi: 10.1038/ejhg.2012.289. 23321620
p.R1847Cc.5539C>T Putative BenignSIFT:
Polyphen: