| Paralogue | Variant | Associated Disease | Mapping Quality | Consensus | Pubmed |
|---|---|---|---|---|---|
| SCN3A | E1900G | Autism spectrum disorder | High | 5 | 24467814 |
To assess whether the paralogue annotation here confidently predicts that variation at this residue is pathogenic, it is important to check the reports in the Pubmed links above to ascertain that the mutations in these paralogues have been proved likely to be disease-causing. It is also important to check that the direction of effect of the variant in the paralogue is compatible with your observed phenotype in SCN5A.
| SCN5A | MEEKFMA---ANP-SKISYEPITTTLRRKH>E<EVS----AMVIQRAF-RRHLLQRS--LKHA | 1924 |
| SCN1A | MEERFMA---SNP-SKVSYQPITTTLKRKQ>E<EVS----AVIIQRAY-RRHLLKRT--VKQA | 1938 |
| SCN2A | MEERFMA---SNP-SKVSYEPITTTLKRKQ>E<EVS----AIIIQRAY-RRYLLKQK--VKKV | 1928 |
| SCN3A | MEDRFMA---SNP-SKVSYEPITTTLKRKQ>E<EVS----AAIIQRNF-RCYLLKQR--LKNI | 1923 |
| SCN4A | MEEKFMA---ANP-SKVSYEPITTTLKRKH>E<EVC----AIKIQRAY-RRHLLQRS--MKQA | 1750 |
| SCN7A | IESGFLL---ANP-FKITCEPITTTLKRKQ>E<AVS----ATIIQRAY-KNYRLRRN--DKNT | 1648 |
| SCN8A | MEERFVA---SNP-SKVSYEPITTTLRRKQ>E<EVS----AVVLQRAY-RGHLARRG--FIC- | 1917 |
| SCN9A | MEERFMS---ANP-SKVSYEPITTTLKRKQ>E<DVS----ATVIQRAY-RRYRLRQN--VKNI | 1901 |
| SCN10A | MEEKFMA---TNL-SKSSYEPIATTLRWKQ>E<DIS----ATVIQKAY-RSYVLHRS--MALS | 1874 |
| SCN11A | MEEKFME---ANP-LKKLYEPIVTTTKRKE>E<ERG----AAIIQKAF-RKYMMKVT--KGDQ | 1756 |
| CACNA1A | LRKEMMAIW-PNL-SQKTLDLLVTPHKSTD>L<TVGKIYAAMMIMEYY-RQSKAKK--LQAMR | 1978 |
| CACNA1B | LRKEISVVW-ANL-PQKTLDLLVPPHKPDE>M<TVGKVYAALMIFDFY-KQNKTTRDQMQQAP | 1879 |
| CACNA1C | LRAIIKKIW-KRT-SMKLLDQVVPPAGDDE>V<TVGKFYATFLIQEYF-RKFKKRKE--QGLV | 1640 |
| CACNA1D | LRAVIKKIW-KKT-SMKLLDQVVPPAGDDE>V<TVGKFYATFLIQDYF-RKFKKRKE--QGLV | 1648 |
| CACNA1E | LQKETLAIW-PHL-SQKMLDLLVPMPKASD>L<TVGKIYAAMMIMDYY-KQSKVKKQ--RQQL | 1890 |
| CACNA1F | LRIVIKKIW-KRM-KQKLLDEVIPPPDEEE>V<TVGKFYATFLIQDYF-RKFRRRKE--KGLL | 1605 |
| CACNA1G | WELKLMDEL-AGPGGQPSAFPSAPSLGGSD>P<-----QIPLAEMEAL-SLTSEIVS--EPSC | 1996 |
| CACNA1H | VSRML-SLPNDSYM----FRPVVPASAPHP>R<-----PLQEVEMETYGAGTPLGSV--ASVH | 1969 |
| CACNA1I | GELTIIDNL-SGSI----FHHYSSPAGCKK>C<HHDKQEVQLAETEAF-SLNSDRSS--SILL | 1868 |
| CACNA1S | LRAIIKKIW-KRT-SMKLLDQVIPPIGDDE>V<TVGKFYATFLIQEHF-RKFMKRQE--EYY- | 1544 |
| cons | > < |
| Protein | CDS | Disease Classification | Disease | dbSNP links | Effect Prediction |
|---|---|---|---|---|---|
| p.E1901K | c.5701G>A | Putative Benign | rs199473325 | SIFT: deleterious Polyphen: probably damaging | |
| Reports | Putative Benign | Genetic testing for long-QT syndrome: distinguishing pathogenic mutations from benign variants. Circulation. 2009 120(18):1752-60. 19841300 | |||
| Putative Benign | An international compendium of mutations in the SCN5A-encoded cardiac sodium channel in patients referred for Brugada syndrome genetic testing. Heart Rhythm. 2010 7(1):33-46. 20129283 | ||||
| p.E1901Q | c.5701G>C | Inherited Arrhythmia | LQTS | rs199473325 | SIFT: deleterious Polyphen: probably damaging |
| Reports | Inherited Arrhythmia | LQTS | Spectrum and prevalence of mutations from the first 2,500 consecutive unrelated patients referred for the FAMILION long QT syndrome genetic test. Heart Rhythm. 2009 6(9):1297-303. 19716085 | ||