Paralogue Annotation for SCN5A residue 923

Residue details

Gene: SCN5A
Reference Sequences: LRG: LRG_289, Ensembl variant: ENST00000333535 / ENSP00000328968
Amino Acid Position: 923
Reference Amino Acid: M - Methionine
Protein Domain: TM Domain 2


Paralogue Variants mapped to SCN5A residue 923

ParalogueVariantAssociated DiseaseMapping QualityConsensusPubmed
SCN1AM976IGeneralized epilepsy with febrile seizures plusHigh9 19522081

To assess whether the paralogue annotation here confidently predicts that variation at this residue is pathogenic, it is important to check the reports in the Pubmed links above to ascertain that the mutations in these paralogues have been proved likely to be disease-causing. It is also important to check that the direction of effect of the variant in the paralogue is compatible with your observed phenotype in SCN5A.



SCN5A-WIETMWDCMEV-----SGQSLCLLVFLLV>M<VIGNLVVLNLFLALLLSSFS-ADNLTAP-D951
SCN1A-WIETMWDCMEV-----AGQAMCLTVFMMV>M<VIGNLVVLNLFLALLLSSFS-ADNLAAT-D1004
SCN2A-WIETMWDCMEV-----AGQTMCLTVFMMV>M<VIGNLVVLNLFLALLLSSFS-SDNLAAT-D995
SCN3A-WIETMWDCMEV-----AGQTMCLIVFMLV>M<VIGNLVVLNLFLALLLSSFS-SDNLAAT-D996
SCN4A-WIETMWDCMEV-----AGQAMCLTVFLMV>M<VIGNLVVLNLFLALLLSSFS-ADSLAAS-D814
SCN7A-WVETLWDCMEV-----AGQSWCIPFYLMV>I<LIGNLLVLYLFLA-LVSSFS-SCKDVTA-E740
SCN8A-WIETMWDCMEV-----AGQAMCLIVFMMV>M<VIGNLVVLNLFLALLLSSFS-ADNLAAT-D989
SCN9A-WIETMWDCMEV-----AGQAMCLIVYMMV>M<VIGNLVVLNLFLALLLSSFS-SDNLTAI-E969
SCN10A-WIENMWACMEV-----GQKSICLILFLTV>M<VLGNLVVLNLFIALLLNSFS-ADNLTAP-E902
SCN11A-WIENMWECMQEAN---ASSSLCVIVFILI>T<VIGKLVVLNLFIALLLNSFS-NEERNGNLE824
CACNA1ADWNEVMYDGIKSQGGV-QGGMVFSIYFIVL>T<LFGNYTLLNVFLAIAVDNLANAQELTKDEQ728
CACNA1BDWNAVMYHGIESQGGV-SKGMFSSFYFIVL>T<LFGNYTLLNVFLAIAVDNLANAQELTKDEE724
CACNA1CDWNSVMYDGIMAYGGPSFPGMLVCIYFIIL>F<ICGNYILLNVFLAIAVDNLADAESLTSAQK767
CACNA1DDWNAVMYDGIMAYGGPSSSGMIVCIYFIIL>F<ICGNYILLNVFLAIAVDNLADAESLNTAQK786
CACNA1EDWNEVMYNGIRSQGGV-SSGMWSAIYFIVL>T<LFGNYTLLNVFLAIAVDNLANAQELTKDEQ717
CACNA1FDWNVVMYDGIMAYGGPFFPGMLVCIYFIIL>F<ICGNYILLNVFLAIAVDNLASGDA-GTAKD771
CACNA1GDWNKVLYNGMAS-T-S----SWAALYFIAL>M<TFGNYVLFNLLVAILVEGFQ-AEEISKRED977
CACNA1HDWNVVLYNGMAS-T-S----SWAALYFVAL>M<TFGNYVLFNLLVAILVEGFQ-AEGDANRSD1028
CACNA1IDWNVVLYNGMAS-T-S----PWASLYFVAL>M<TFGNYVLFNLLVAILVEGFQAEGDAN-RSY875
CACNA1SDWTSMMYNGIMAYGGPSYPGMLVCIYFIIL>F<VCGNYILLNVFLAIAVDNLAEAESLTSAQK675
cons                              > <                              

See full Alignment of Paralogues


Known Variants in SCN5A

There are currently no reported variants at residue 923 for SCN5A.