Paralogue Annotation for KCNQ1 residue 186

Residue details

Gene: KCNQ1
Reference Sequences: LRG: LRG_287, Ensembl variant: ENST00000155840 / ENSP00000155840
Amino Acid Position: 186
Reference Amino Acid: G - Glycine
Protein Domain: Transmembrane/Linker/Pore


Paralogue Variants mapped to KCNQ1 residue 186

ParalogueVariantAssociated DiseaseMapping QualityConsensusPubmed
KCNA1A242PEpilepsy partial and myokymiaMedium8 11026449, 23349320

To assess whether the paralogue annotation here confidently predicts that variation at this residue is pathogenic, it is important to check the reports in the Pubmed links above to ascertain that the mutations in these paralogues have been proved likely to be disease-causing. It is also important to check that the direction of effect of the variant in the paralogue is compatible with your observed phenotype in KCNQ1.



KCNQ1F-WMEIVLVVFFGTEYVVRLWSAGCRSKYV>G<LWGRLRFARKPISIIDLIVVVASMVVLCVG216
KCNQ2Y-ILEIVTIVVFGVEYFVRIWAAGCCCRYR>G<WRGRLKFARKPFCVIDIMVLIASIAVLAAG186
KCNQ3L-LLETFAIFIFGAEFALRIWAAGCCCRYK>G<WRGRLKFARKPLCMLDIFVLIASVPVVAVG216
KCNQ4L-ILEFVMIVVFGLEYIVRVWSAGCCCRYR>G<WQGRFRFARKPFCVIDFIVFVASVAVIAAG192
KCNQ5L-ILEFVMIVVFGLEFIIRIWSAGCCCRYR>G<WQGRLRFARKPFCVIDTIVLIASIAVVSAK220
KCNA1F-IVETLCIIWFSFELVVR---------FF>A<CPSKTDFFKNIMNFIDIVAIIPYFITLGTE272
KCNA10F-MVESTCIVWFTFELVLR---------FV>V<CPSKTDFFRNIMNIIDIISIIPYFATLITE322
KCNA2F-IVETLCIIWFSFEFLVR---------FF>A<CPSKAGFFTNIMNIIDIVAIIPYFITLGTE273
KCNA3F-VVETLCIIWFSFELLVR---------FF>A<CPSKATFSRNIMNLIDIVAIIPYFITLGTE346
KCNA4F-IVETVCIVWFSFEFVVR---------CF>A<CPSQALFFKNIMNIIDIVSILPYFITLGTD422
KCNA5F-IVETTCVIWFTFELLVR---------FF>A<CPSKAGFSRNIMNIIDVVAIFPYFITLGTE375
KCNA6F-LVETLCIVWFTFELLVR---------FS>A<CPSKPAFFRNIMNIIDLVAIFPYFITLGTE314
KCNA7F-VVETLCICWFSFELLVR---------LL>V<CPSKAIFFKNVMNLIDFVAILPYFVALGTE260
KCNB1A-HVEAVCIAWFTMEYLLR---------FL>S<SPKKWKFFKGPLNAIDLLAILPYYVTIFLT280
KCNB2A-HVEAVCIAWFTMEYLLR---------FL>S<SPNKWKFFKGPLNVIDLLAILPYYVTIFLT284
KCNC1LTYIEGVCVVWFTFEFLMR---------VI>F<CPNKVEFIKNSLNIIDFVAILPFYLEVGLS296
KCNC2LTYVEGVCVVWFTFEFLVR---------IV>F<SPNKLEFIKNLLNIIDFVAILPFYLEVGLS333
KCNC3LTYVEGVCVVWFTFEFLMR---------IT>F<CPDKVEFLKSSLNIIDCVAILPFYLEVGLS399
KCNC4LTYIEGVCVLWFTLEFLVR---------IV>C<CPDTLDFVKNLLNIIDFVAILPFYLEVGLS332
KCND1F-CMDTACVLIFTGEYLLR---------LF>A<APSRCRFLRSVMSLIDVVAILPYYIGLLVP282
KCND2F-CLDTACVMIFTVEYLLR---------LA>A<APSRYRFVRSVMSIIDVVAILPYYIGLVMT280
KCND3F-CLDTACVMIFTVEYLLR---------LF>A<APSRYRFIRSVMSIIDVVAIMPYYIGLVMT277
KCNF1E-NVETACIGWFTLEYLLR---------LF>S<SPNKLHFALSFMNIVDVLAILPFYVSLTLT273
KCNG1F-IVESVCVGWFSLEFLLR---------LI>Q<APSKFAFLRSPLTLIDLVAILPYYITLLVD319
KCNG2F-VLETVCVAWFSFEFLLR---------SL>Q<AESKCAFLRAPLNIIDILALLPFYVSLLLG269
KCNG3G-IIEAICIGWFTAECIVR---------FI>V<SKNKCEFVKRPLNIIDLLAITPYYISVLMT272
KCNG4F-IVETICVAWFSLEFCLR---------FV>Q<AQDKCQFFQGPLNIIDILAISPYYVSLAVS313
KCNS1R-RLEYFCIAWFSFEVSSR---------LL>L<APSTRNFFCHPLNLIDIVSVLPFYLTLLAG323
KCNS2E-IVEHFGIAWFTFELVAR---------FA>V<APDFLKFFKNALNLIDLMSIVPFYITLVVN278
KCNS3E-GVEIACIAWFTGELAVR---------LA>A<APCQKKFWKNPLNIIDFVSIIPFYATLAVD273
KCNV1E-ILEYVCISWFTGEFVLR---------FL>C<VRDRCRFLRKVPNIIDLLAILPFYITLLVE293
KCNV2E-HVEMLCMGFFTLEYLLR---------LA>S<TPDLRRFARSALNLVDLVAILPLYLQLLLE353
cons                              > <                              

See full Alignment of Paralogues


Known Variants in KCNQ1

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.G186Rc.556G>C Inherited ArrhythmiaLQTSSIFT: deleterious
Polyphen: probably damaging
ReportsInherited ArrhythmiaLQTS Spectrum and prevalence of mutations from the first 2,500 consecutive unrelated patients referred for the FAMILION long QT syndrome genetic test. Heart Rhythm. 2009 6(9):1297-303. 19716085
Inherited ArrhythmiaLQTS Genetic testing for long-QT syndrome: distinguishing pathogenic mutations from benign variants. Circulation. 2009 120(18):1752-60. 19841300
Inherited ArrhythmiaLQTS Phylogenetic and physicochemical analyses enhance the classification of rare nonsynonymous single nucleotide variants in type 1 and 2 long-QT syndrome. Circ Cardiovasc Genet. 2012 5(5):519-28. doi: 10.1161/CIRCGENETICS.112.963785. 22949429
p.G186Sc.556G>A Inherited ArrhythmiaLQTSSIFT: deleterious
Polyphen: probably damaging
ReportsInherited ArrhythmiaLQTS Location of mutation in the KCNQ1 and phenotypic presentation of long QT syndrome. J Cardiovasc Electrophysiol. 2003 14(11):1149-53. 14678125
Inherited ArrhythmiaLQTS Clinical aspects of type-1 long-QT syndrome by location, coding type, and biophysical function of mutations involving the KCNQ1 gene. Circulation. 2007 115(19):2481-9. 17470695
Inherited ArrhythmiaLQTS The genetic basis of long QT and short QT syndromes: a mutation update. Hum Mutat. 2009 30(11):1486-511. 19862833
p.G186Dc.557G>A Inherited ArrhythmiaJLNSSIFT:
Polyphen:
ReportsInherited ArrhythmiaJLNS KCNQ1 mutations associated with Jervell and Lange-Nielsen syndrome and autosomal recessive Romano-Ward syndrome in India-expanding the spectrum of long QT syndrome type 1. Am J Med Genet A. 2016 170(6):1510-9. doi: 10.1002/ajmg.a.37636. 27041150
p.Gly186Valc.557G>T UnknownSIFT:
Polyphen:
p.Gly186Aspc.557G>A UnknownSIFT:
Polyphen: