KCNQ1 Paralogue Annotation

This page details the annotation of KCNQ1 with disease causing variants in the following paralogues: KCNQ2, KCNV2, KCNA5, KCNA1, KCNQ4, KCNC3, KCNQ3, KCND3, KCNS1, KCND2, KCNB1, KCNB2, KCNA2, KCNC1, KCNS2. Click here to see the multiple sequence alignment of KCNQ1 with all paralogues.

The paralogue variant mappings to KCNQ1 are based on the Locus Reference Genomic entry for KCNQ1 - LRG_287. This is based on the transcript ENST00000155840 and protein ENSP00000155840 (676 amino acids) for the Ensembl gene ENSG00000053918.



Amino acid residues of KCNQ1 with mapped disease-causing missense variants from paralogues are shown below, along with details about the KCNQ1 protein domain and known missense variant status for these residues (the number of published reports for the residue is in parentheses), the consensus from the M-Coffee multiple sequence alignment at this mapping and the disease(s) associated with the paralogue variant(s). Click on the residue to see further details about the known KCNQ1 variants and the mapped paralogue variants.

ResidueDomainKnown Variant Status ConsensusMapped Paralogues and Variant Disease
7-P N-terminus Arrhythmia (3)1 KCNQ2 - Epilepsy, benign neonatal
46-A N-terminus Arrhythmia (7)7 KCNC3 - Spinocerebellar ataxia 13
52-A N-terminus None9 KCNV2 - Cone dystrophy with supernormal rod ERG
53-P N-terminus None9 KCNV2 - Cone dystrophy, autosomal recessive
57-G N-terminus Arrhythmia (2)9 KCNA5 - Pulmonary arterial hypertension
59-P N-terminus None9 KCNV2 - Cone dystrophy with supernormal rod ERG
63-P N-terminus None9 KCNA5 - Pulmonary arterial hypertension
71-A N-terminus Prob. Benign (0)8 KCNV2 - Cone dystrophy with supernormal rod ERG
72-A N-terminus None8 KCNV2 - Cone dystrophy with supernormal rod ERG
78-D N-terminus None9 KCNV2 - Cone dystrophy with supernormal rod ERG
87-L N-terminus None5 KCNA5 - Pulmonary arterial hypertension ?
89-P N-terminus Prob. Benign (0)5 KCNV2 - Cone dystrophy with supernormal rod ERG
97-R N-terminus None3 KCNV2 - Cone dystrophy with supernormal rod ERG
104-T N-terminus Prob. Benign (0)3 KCNV2 - Cone dystrophy with supernormal rod ERG
107-Q N-terminus None7 KCNV2 - Cone dystrophy with supernormal rod ERG
119-G N-terminus Arrhythmia (2)9 KCNV2 - Cone dystrophy with supernormal rod ERG
122-C Transmembrane/Linker/Pore Arrhythmia (3)8 KCNV2 - Cone dystrophy with supernormal rod ERG
123-F Transmembrane/Linker/Pore None8 KCNA1 - Episodic ataxia 1
124-V Transmembrane/Linker/Pore None9 KCNV2 - Cone dystrophy with supernormal rod ERG
130-F Transmembrane/Linker/Pore None9 KCNA1 - Episodic ataxia / myokymia
133-V Transmembrane/Linker/Pore Arrhythmia (3)9 KCNA1 - Episodic ataxia / myokymia
140-S Transmembrane/Linker/Pore Arrhythmia (11)9 KCNA1 - Episodic ataxia / myokymia
141-V Transmembrane/Linker/Pore Arrhythmia (7)9 KCNA1 - Episodic ataxia 1
144-T Transmembrane/Linker/Pore Arrhythmia (4)9 KCNQ2 - Epilepsy, benign neonatal, Epileptic encephalopathy, early-onset
148-Y Transmembrane/Linker/Pore None8 KCNV2 - Epilepsy
149-A Transmembrane/Linker/Pore None8 KCNQ2 - Epilepsy, benign neonatal
152-A Transmembrane/Linker/Pore None4 KCNQ2 - Epilepsy, benign neonatal
154-G Transmembrane/Linker/Pore None6 KCNA5 - Atrial fibrillation
161-I Transmembrane/Linker/Pore None9 KCNA1 - Episodic ataxia / myokymia, Myokymia
174-R Transmembrane/Linker/Pore Arrhythmia (15)9 KCNA1 - Episodic ataxia / myokymia
KCNQ2 - Infantile spasms
KCNV2 - Cone dystrophy with supernormal rod ERG
184-Y Transmembrane/Linker/Pore Arrhythmia (8)8 KCNQ2 - Seizures, benign neonatal-infantile
185-V Transmembrane/Linker/Pore Prob. Benign (0)8 KCNV2 - Cone dystrophy with supernormal rod ERG ?
186-G Transmembrane/Linker/Pore Arrhythmia (7)8 KCNA1 - Epilepsy partial and myokymia
188-W Transmembrane/Linker/Pore Prob. Benign (0)8 KCNA1 - Myokymia
189-G Transmembrane/Linker/Pore Arrhythmia (12)8 KCNQ2 - Epilepsy, benign neonatal, Seizures, benign neonatal
193-F Transmembrane/Linker/Pore Arrhythmia (2)9 KCNA1 - Episodic ataxia / myokymia
KCNV2 - Cone dystrophy with supernormal rod ERG
199-S Transmembrane/Linker/Pore Arrhythmia (1)9 KCNA1 - Hypomagnesemia
205-V Transmembrane/Linker/Pore Arrhythmia (7)9 KCNQ2 - Epileptic encephalopathy, early-onset, West syndrome
206-V Transmembrane/Linker/Pore Prob. Benign (0)9 KCNA1 - Episodic ataxia, Episodic ataxia 1
KCNA2 - Epileptic encephalopathy
KCNQ4 - Deafness, autosomal dominant 2
219-G Transmembrane/Linker/Pore Prob. Benign (0)4 KCNQ2 - Epileptic encephalopathy, early-onset
224-T Transmembrane/Linker/Pore Arrhythmia (1)6 KCNA2 - Epileptic encephalopathy, early onset
226-A Transmembrane/Linker/Pore Arrhythmia (2)8 KCNQ2 - Epilepsy, benign neonatal
KCNV2 - Cone dystrophy, autosomal recessive
229-G Transmembrane/Linker/Pore Arrhythmia (3)9 KCNV2 - Cone dystrophy, autosomal recessive
231-R Transmembrane/Linker/Pore Arrhythmia (12)9 KCNA2 - Ataxia & myoclonic epilepsy
KCNQ2 - Epileptic encephalopathy, early onset, Epileptic encephalopathy, neonatal
KCNQ3 - Intellectual disability, Intellectual disability, nonsyndromic
232-F Transmembrane/Linker/Pore None9 KCNA2 - Epileptic encephalopathy
233-L Transmembrane/Linker/Pore Prob. Benign (0)9 KCNQ2 - Epileptic encephalopathy, early-onset
234-Q Transmembrane/Linker/Pore None9 KCNC3 - Spinocerebellar ataxia 13
235-I Transmembrane/Linker/Pore Arrhythmia (7)9 KCNA1 - Episodic ataxia
KCNQ2 - Epileptic encephalopathy, neonatal
237-R Transmembrane/Linker/Pore None9 KCNB1 - Epilepsy, infantile
KCNC1 - Epilepsy, progressive myoclonus
KCNC3 - Spinocerebellar ataxia 13
KCNQ2 - Epilepsy, benign neonatal, Peripheral nerve hyperexcitability
238-M Transmembrane/Linker/Pore Prob. Benign (0)9 KCNQ2 - Epilepsy, benign neonatal
240-H Transmembrane/Linker/Pore Prob. Benign (0)9 KCNQ2 - Epileptic encephalopathy, early-onset, Epileptic encephalopathy, neonatal
241-V Transmembrane/Linker/Pore Arrhythmia (4)9 KCNA1 - Episodic ataxia
KCNQ4 - Hearing loss
242-D Transmembrane/Linker/Pore Arrhythmia (7)9 KCNC3 - Cerebral palsy, ataxic
KCNQ2 - Epilepsy, benign neonatal
243-R Transmembrane/Linker/Pore Arrhythmia (32)9 KCNA1 - Episodic ataxia 1
KCNQ2 - Epilepsy, benign neonatal, Epileptic encephalopathy, neonatal
244-Q Transmembrane/Linker/Pore None9 KCNQ2 - Epilepsy, benign neonatal
245-G Transmembrane/Linker/Pore Arrhythmia (1)9 KCNQ2 - Epileptic encephalopathy, neonatal
247-T Transmembrane/Linker/Pore None9 KCNA1 - Episodic ataxia
KCNQ2 - Seizures, benign infantile
250-L Transmembrane/Linker/Pore Arrhythmia (3)9 KCNA1 - Episodic ataxia / myokymia
254-V Transmembrane/Linker/Pore Arrhythmia (21)9 KCNQ4 - Hearing loss, non-syndromic, autosomal dominant
255-V Transmembrane/Linker/Pore None9 KCNV2 - Cone dystrophy with supernormal rod ERG
258-H Transmembrane/Linker/Pore Arrhythmia (5)9 KCNQ2 - Epilepsy, benign neonatal
KCNQ4 - Hearing loss, non-syndromic
260-Q Transmembrane/Linker/Pore None9 KCNV2 - Parkinson disease, early onset
261-E Transmembrane/Linker/Pore Arrhythmia (14)9 KCNA1 - Episodic ataxia / myokymia
KCNQ2 - Epileptic encephalopathy, neonatal
262-L Transmembrane/Linker/Pore Arrhythmia (2)9 KCNC3 - Spinocerebellar ataxia 13
264-T Transmembrane/Linker/Pore Prob. Benign (0)9 KCNQ2 - Epileptic encephalopathy, neonatal
265-T Transmembrane/Linker/Pore Arrhythmia (2)9 KCNA1 - Episodic ataxia
267-Y Transmembrane/Linker/Pore None9 KCNQ2 - Epileptic encephalopathy, early infantile
269-G Transmembrane/Linker/Pore Arrhythmia (23)9 KCNQ2 - Epileptic encephalopathy, early-onset
273-L Transmembrane/Linker/Pore Arrhythmia (19)9 KCNQ2 - Epilepsy, benign neonatal
277-S Transmembrane/Linker/Pore Arrhythmia (11)9 KCNQ2 - Epilepsy, benign neonatal
278-Y Transmembrane/Linker/Pore Arrhythmia (3)9 KCNA1 - Episodic ataxia
KCNB1 - Epileptic encephalopathy
279-F Transmembrane/Linker/Pore Arrhythmia (1)9 KCND3 - Spinocerebellar ataxia 22
280-V Transmembrane/Linker/Pore Arrhythmia (3)9 KCNQ2 - Epilepsy, benign neonatal
283-A Transmembrane/Linker/Pore Arrhythmia (3)9 KCNQ2 - Epileptic encephalopathy, type 7
284-E Transmembrane/Linker/Pore Arrhythmia (2)9 KCNQ4 - Deafness, autosomal dominant 2
286-D Transmembrane/Linker/Pore None8 KCND3 - Spinocerebellar ataxia 22
KCNQ4 - Deafness, autosomal dominant 2
293-R Transmembrane/Linker/Pore Arrhythmia (7)8 KCNQ2 - Epilepsy, benign neonatal
294-V Transmembrane/Linker/Pore Prob. Benign (0)9 KCNV2 - Cone dystrophy with supernormal rod ERG ?
295-E Transmembrane/Linker/Pore None9 KCNA5 - Atrial fibrillation
KCNQ3 - Epilepsy, rolandic & benign neonatal convulsions
297-G Transmembrane/Linker/Pore Prob. Benign (2)9 KCND3 - Spinocerebellar ataxia 19
299-Y Transmembrane/Linker/Pore None9 KCNQ4 - Deafness, autosomal dominant 2
300-A Transmembrane/Linker/Pore Arrhythmia (7)9 KCNQ2 - Epileptic encephalopathy, early-onset, Epileptic encephalopathy, neonatal
301-D Transmembrane/Linker/Pore None9 KCNA5 - Atrial fibrillation
KCNQ3 - Epilepsy, benign neonatal
303-L Transmembrane/Linker/Pore Arrhythmia (2)9 KCNQ2 - Epileptic encephalopathy, early-onset
KCNQ4 - Deafness, autosomal dominant 2
304-W Transmembrane/Linker/Pore Arrhythmia (3)9 KCNQ4 - Hearing loss, non-syndromic, autosomal dominant
305-W Transmembrane/Linker/Pore Arrhythmia (9)9 KCNQ3 - Epilepsy, benign neonatal
KCNQ4 - Deafness, autosomal dominant 2, Hearing loss, non-syndromic
KCNV2 - Cone dystrophy with supernormal rod ERG
306-G Transmembrane/Linker/Pore Arrhythmia (14)9 KCNQ2 - Infantile seizures
KCNQ3 - Epilepsy, benign neonatal
309-T Transmembrane/Linker/Pore Arrhythmia (3)9 KCNB1 - Epileptic encephalopathy
KCNQ2 - Epileptic encephalopathy, neonatal
310-V Transmembrane/Linker/Pore Arrhythmia (6)9 KCNQ4 - Deafness, autosomal dominant 2
311-T Transmembrane/Linker/Pore Arrhythmia (3)9 KCNA1 - Intellectual disability
KCNQ2 - Ohtahara syndrome
312-T Transmembrane/Linker/Pore Arrhythmia (14)9 KCNA2 - Epileptic encephalopathy, early onset
KCNQ2 - Epileptic encephalopathy, early infantile
313-I Transmembrane/Linker/Pore Arrhythmia (1)9 KCNB1 - Neurodevelopmental disorder
KCNQ3 - Epilepsy, benign neonatal
314-G Transmembrane/Linker/Pore Arrhythmia (28)9 KCNB1 - Epileptic encephalopathy
KCNQ2 - Epileptic encephalopathy, type 7
KCNQ4 - Deafness, autosomal dominant 2
KCNV2 - Cone dystrophy with supernormal rod ERG
315-Y Transmembrane/Linker/Pore Arrhythmia (24)9 KCNQ4 - Hearing loss
316-G Transmembrane/Linker/Pore Arrhythmia (8)9 KCNB1 - Epileptic encephalopathy, early onset
KCNQ2 - Epileptic encephalopathy, early-onset, Epileptic encephalopathy, neonatal
KCNQ4 - Deafness, autosomal dominant 2
KCNV2 - Cone dystrophy with supernormal rod ERG
317-D Transmembrane/Linker/Pore Arrhythmia (6)9 KCNS2 - Essential tremor, early-onset
318-K Transmembrane/Linker/Pore Arrhythmia (2)9 KCND3 - Spinocerebellar ataxia 19
319-V Transmembrane/Linker/Pore None9 KCNQ2 - Epilepsy, benign neonatal
320-P Transmembrane/Linker/Pore Arrhythmia (9)9 KCNA5 - Atrial fibrillation
KCNQ2 - Ohtahara syndrome
KCNQ4 - Hearing loss, non-syndromic, autosomal dominant
322-T Transmembrane/Linker/Pore Arrhythmia (13)9 KCND3 - Spinocerebellar ataxia 22
KCNQ2 - Epileptic encephalopathy, early-onset
325-G Transmembrane/Linker/Pore Arrhythmia (16)9 KCNQ2 - Epileptic encephalopathy, early-onset, Epileptic encephalopathy, neonatal
KCNQ4 - Deafness, autosomal dominant 2
KCNV2 - Cone-rod dystrophy
326-K Transmembrane/Linker/Pore None9 KCNQ3 - Epilepsy & intellectual disability, Epilepsy, benign neonatal, Seizures, benign neonatal
KCNQ4 - Hearing loss, non-syndromic, autosomal dominant
329-A Transmembrane/Linker/Pore Prob. Benign (0)9 KCNQ2 - Epilepsy, benign neonatal, Epileptic encephalopathy, early-onset
331-C Transmembrane/Linker/Pore None9 KCNQ2 - Epileptic encephalopathy, early-onset
335-F Transmembrane/Linker/Pore Prob. Benign (2)9 KCND3 - Spinocerebellar ataxia 19
336-A Transmembrane/Linker/Pore None9 KCNB1 - Epilepsy, infantile
KCNQ2 - Epileptic encephalopathy, early-onset
KCNQ3 - Epilepsy, benign neonatal
KCNV2 - Leber congenital amaurosis
337-I Transmembrane/Linker/Pore None9 KCND3 - Sudden unexplained death syndrome
339-F Transmembrane/Linker/Pore Arrhythmia (6)9 KCNQ2 - Epileptic encephalopathy, early-onset
340-F Transmembrane/Linker/Pore Arrhythmia (1)9 KCNQ2 - Epileptic encephalopathy, early infantile
341-A Transmembrane/Linker/Pore Arrhythmia (41)9 KCNQ2 - Epilepsy, benign neonatal, Sudden unexpected death in epilepsy
343-P Transmembrane/Linker/Pore Arrhythmia (9)9 KCNA2 - Epileptic encephalopathy
344-A Transmembrane/Linker/Pore Arrhythmia (8)9 KCNA1 - Episodic ataxia / myokymia
KCNC3 - Spinocerebellar ataxia 13
KCNQ2 - Epileptic encephalopathy, early-onset
346-I Transmembrane/Linker/Pore None9 KCND2 - Autism & epilepsy
347-L Transmembrane/Linker/Pore Arrhythmia (1)9 KCNA1 - Episodic ataxia 1
348-G Transmembrane/Linker/Pore None9 KCNA1 - Episodic ataxia / myokymia, Episodic ataxia with cerebellar dysfunction & cogn
350-G C-terminus Arrhythmia (5)9 KCNQ2 - Epileptic encephalopathy, neonatal
KCNQ4 - Deafness, autosomal dominant 2
351-F C-terminus Arrhythmia (3)9 KCNB1 - Epileptic encephalopathy, early onset
354-K C-terminus Arrhythmia (2)9 KCNA1 - Episodic ataxia / myokymia, Episodic ataxia 1
KCNQ2 - Epileptic encephalopathy, early infantile
357-Q C-terminus Arrhythmia (5)8 KCNS1 - Autism
359-Q C-terminus None7 KCNA5 - Atrial fibrillation
KCNQ2 - Epileptic encephalopathy, neonatal
360-R C-terminus Arrhythmia (8)7 KCNQ2 - Epileptic encephalopathy, neonatal
KCNQ3 - Seizures, benign infantile
368-I C-terminus None4 KCNQ2 - Epilepsy, benign neonatal
372-A C-terminus Arrhythmia (1)3 KCNQ2 - Epileptic encephalopathy, early-onset
374-L C-terminus Arrhythmia (2)2 KCNQ2 - Epilepsy, benign neonatal
377-T C-terminus None2 KCNQ3 - Epilepsy, rolandic without neonatal seizures
379-W C-terminus Arrhythmia (5)2 KCNQ2 - Epilepsy, benign neonatal
386-N C-terminus Prob. Benign (0)1 KCNQ2 - Epilepsy, benign neonatal
387-P C-terminus None1 KCNQ2 - Epilepsy, benign neonatal
388-D C-terminus Prob. Benign (0)1 KCNQ2 - Epilepsy, benign neonatal, Epileptic encephalopathy, early-onset
390-S C-terminus None1 KCNQ2 - Epilepsy, benign neonatal
391-T C-terminus Arrhythmia (3)1 KCNQ2 - Epilepsy, benign neonatal
392-W C-terminus Arrhythmia (2)1 KCND3 - Brugada syndrome
394-I C-terminus None1 KCNQ2 - Epilepsy, benign neonatal
409-S C-terminus None1 KCNQ2 - Myoclonus epilepsy
446-D C-terminus Arrhythmia (2)1 KCNB2 - Brugada syndrome
480-M C-terminus None1 KCNQ4 - Deafness, autosomal dominant 2 ?
489-L C-terminus None1 KCNQ2 - Epilepsy, benign neonatal
490-D C-terminus None1 KCND3 - Sudden infant death syndrome
515-K C-terminus None2 KCNQ2 - Epileptic encephalopathy, early-onset
520-M C-terminus Arrhythmia (5)2 KCNQ2 - Epileptic encephalopathy, neonatal
521-Q C-terminus None2 KCNQ2 - Seizures, benign neonatal
526-K C-terminus Arrhythmia (3)2 KCNQ2 - Epileptic encephalopathy, neonatal
527-K C-terminus None2 KCNQ2 - Epilepsy, benign neonatal, Ohtahara syndrome, Ohtahara/West syndrome
528-K C-terminus None1 KCNQ2 - Epilepsy, benign neonatal
530-Q C-terminus None2 KCNQ2 - Epileptic encephalopathy, neonatal
534-K C-terminus None2 KCNQ2 - Epileptic encephalopathy, neonatal
535-P C-terminus None2 KCNQ2 - Epileptic encephalopathy, early infantile, Ohtahara syndrome
537-D C-terminus None1 KCNQ2 - Epileptic encephalopathy, early-onset, Ohtahara syndrome
549-H C-terminus None2 KCND3 - Brugada syndrome, Sudden unexplained death syndrome
552-L C-terminus Prob. Benign (0)2 KCNQ2 - Epilepsy, benign neonatal, Epileptic encephalopathy, neonatal
555-R C-terminus Arrhythmia (21)2 KCNQ2 - Epilepsy, benign neonatal, Infantile spasms
562-R C-terminus Arrhythmia (6)2 KCNQ2 - Epilepsy, benign neonatal
566-S C-terminus Arrhythmia (10)3 KCNQ2 - Epilepsy, rolandic without neonatal seizures
569-K C-terminus Arrhythmia (2)3 KCNQ2 - Epilepsy, benign, infantile offset
KCNQ3 - Epilepsy, idiopathic , Epilepsy, rolandic without neonatal seizures
606-L C-terminus None2 KCNQ2 - Epilepsy, benign neonatal
631-P C-terminus None1 KCNQ4 - Deafness
656-S C-terminus Prob. Benign (0)2 KCND2 - J-wave syndrome with sudden cardiac death