Paralogue Annotation for KCNQ1 residue 350

Residue details

Gene: KCNQ1
Reference Sequences: LRG: LRG_287, Ensembl variant: ENST00000155840 / ENSP00000155840
Amino Acid Position: 350
Reference Amino Acid: G - Glycine
Protein Domain: C-terminus


Paralogue Variants mapped to KCNQ1 residue 350

ParalogueVariantAssociated DiseaseMapping QualityConsensusPubmed
KCNQ4G321SDeafness, autosomal dominant 2High9 10369879, 23750663, 25525159
KCNQ2G315REpileptic encephalopathy, neonatalHigh9 24107868

To assess whether the paralogue annotation here confidently predicts that variation at this residue is pathogenic, it is important to check the reports in the Pubmed links above to ascertain that the mutations in these paralogues have been proved likely to be disease-causing. It is also important to check that the direction of effect of the variant in the paralogue is compatible with your observed phenotype in KCNQ1.



KCNQ1PQTWVGKTIASCFSVFAISFFALPAGILGS>G<FALKVQQKQRQKHFNRQIPA--AASLI-QT377
KCNQ2PQTWNGRLLAATFTLIGVSFFALPAGILGS>G<FALKVQEQHRQKHFEKRRNP--AAGLI-QS342
KCNQ3PKTWEGRLIAATFSLIGVSFFALPAGILGS>G<LALKVQEQHRQKHFEKRRKP--AAELI-QA381
KCNQ4PHTWLGRVLAAGFALLGISFFALPAGILGS>G<FALKVQEQHRQKHFEKRRMP--AANLI-QA348
KCNQ5PLTWLGRLLSAGFALLGISFFALPAGILGS>G<FALKVQEQHRQKHFEKRRNP--AANLI-QC376
KCNA1PVTIGGKIVGSLCAIAGVLTIALPVPVIVS>N<FNYFYHRETEGEEQAQLLH-----VS--SP433
KCNA10PTTPGGKIVGTLCAIAGVLTIALPVPVIVS>N<FNYFYHRETENEEKQNIPGEIERI------483
KCNA2PTTIGGKIVGSLCAIAGVLTIALPVPVIVS>N<FNYFYHRETEGEEQAQYLQ-----VT--SC435
KCNA3PVTIGGKIVGSLCAIAGVLTIALPVPVIVS>N<FNYFYHRETEGEEQSQYMH-----VG--SC505
KCNA4PITVGGKIVGSLCAIAGVLTIALPVPVIVS>N<FNYFYHRETENEEQTQLTQ-----NAV-SC586
KCNA5PITVGGKIVGSLCAIAGVLTIALPVPVIVS>N<FNYFYHRETDHEEPAVLKEE--QGTQS-QG545
KCNA6PMTVGGKIVGSLCAIAGVLTIALPVPVIVS>N<FNYFYHRETEQEEQGQYTHV----------480
KCNA7PVTVGGKIVGSLCAIAGVLTISLPVPVIVS>N<FSYFYHRETEGEEAGMFSHV----------416
KCNB1PKTLLGKIVGGLCCIAGVLVIALPIPIIVN>N<FSEFYKEQKRQEKAIKRREA--LERA--KR441
KCNB2PKTLLGKIVGGLCCIAGVLVIALPIPIIVN>N<FSEFYKEQKRQEKAIKRREA--LERA--KR445
KCNC1PQTWSGMLVGALCALAGVLTIAMPVPVIVN>N<FGMYYSLAMAKQKLPKKKKK--HIPR--PP464
KCNC2PQTWSGMLVGALCALAGVLTIAMPVPVIVN>N<FGMYYSLAMAKQKLPRKRKK--HIPP--AP501
KCNC3PKTWSGMLVGALCALAGVLTIAMPVPVIVN>N<FGMYYSLAMAKQKLPKKKNK--HIPR--PP567
KCNC4PKTWSGMLVGALCALAGVLTIAMPVPVIVN>N<FGMYYSLAMAKQKLPKKRKK--HVPR--PA500
KCND1PSTIAGKIFGSICSLSGVLVIALPVPVIVS>N<FSRIYHQNQRADKRRAQQKV--RLARIRLA438
KCND2PKTIAGKIFGSICSLSGVLVIALPVPVIVS>N<FSRIYHQNQRADKRRAQKKA--RLARIRAA436
KCND3PKTIAGKIFGSICSLSGVLVIALPVPVIVS>N<FSRIYHQNQRADKRRAQKKA--RLARIRVA433
KCNF1PKTTLGKLNAAISFLCGVIAIALPIHPIIN>N<FVRYYNKQRVLETAAKHELE--LMEL--N-433
KCNG1PRSTPGQVVALSSILSGILLMAFPVTSIFH>T<FSRSYLELKQEQERVMFRRA--QFLI----486
KCNG2PRSLPGQVVALSSILSGILLMAFPVTSIFH>T<FSRSYSELKEQQQRAASPEP--ALQE----431
KCNG3PITVPGRILGGVCVVSGIVLLALPITFIYH>S<FVQCYHELKFRSARYSR-------------428
KCNG4PRSVPGQMVALSSILSGILIMAFPATSIFH>T<FSHSYLELKKEQEQLQARLR--HLQN----480
KCNS1PVTVAGKLAASGCILGGILVVALPITIIFN>K<FSHFYRRQKALEAAVRNSNH--QEFE--D-484
KCNS2PGTTAGKLTASACILAGILVVVLPITLIFN>K<FSHFYRRQKQLESAMRSCDF--GDGM--K-437
KCNS3PVTLAGKLIASTCIICGILVVALPITIIFN>K<FSKYYQKQKDIDVDQCSEDA--PEKC--H-433
KCNV1PDTTTGKIVAFMCILSGILVLALPIAIIND>R<FSACYFTLKLKEAAVRQREA--LKKL--TK456
KCNV2PETHLGRFFAFLCIAFGIILNGMPISILYN>K<FSDYYSKLKAYEYTTIRRER--GEVN--F-520
cons                              > <                              

See full Alignment of Paralogues


Known Variants in KCNQ1

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.G350Rc.1048G>C Inherited ArrhythmiaLQTSSIFT: deleterious
Polyphen: probably damaging
ReportsInherited ArrhythmiaLQTS Genetic testing in the long QT syndrome: development and validation of an efficient approach to genotyping in clinical practice. JAMA. 2005 294(23):2975-80. 16414944
Inherited ArrhythmiaLQTS RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease. Science. 2015 347(6218):1254806. doi: 10.1126/science.1254806. 25525159
p.G350Rc.1048G>A Inherited ArrhythmiaLQTSSIFT: deleterious
Polyphen: probably damaging
ReportsInherited ArrhythmiaLQTS Spectrum and prevalence of mutations from the first 2,500 consecutive unrelated patients referred for the FAMILION long QT syndrome genetic test. Heart Rhythm. 2009 6(9):1297-303. 19716085
Inherited ArrhythmiaLQTS RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease. Science. 2015 347(6218):1254806. doi: 10.1126/science.1254806. 25525159
p.G350Vc.1049G>T Inherited ArrhythmiaLQTSSIFT:
Polyphen:
ReportsInherited ArrhythmiaLQTS Results of genetic testing in 855 consecutive unrelated patients referred for long QT syndrome in a clinical laboratory. Genet Test Mol Biomarkers. 2013 17(7):553-61. doi: 10.1089/gtmb.2012.0118. 23631430