Paralogue Annotation for KCNQ1 residue 297

Residue details

Gene: KCNQ1
Reference Sequences: LRG: LRG_287, Ensembl variant: ENST00000155840 / ENSP00000155840
Amino Acid Position: 297
Reference Amino Acid: G - Glycine
Protein Domain: Transmembrane/Linker/Pore


Paralogue Variants mapped to KCNQ1 residue 297

ParalogueVariantAssociated DiseaseMapping QualityConsensusPubmed
KCND3T352PSpinocerebellar ataxia 19Medium9 23280838, 25854634

To assess whether the paralogue annotation here confidently predicts that variation at this residue is pathogenic, it is important to check the reports in the Pubmed links above to ascertain that the mutations in these paralogues have been proved likely to be disease-causing. It is also important to check that the direction of effect of the variant in the paralogue is compatible with your observed phenotype in KCNQ1.



KCNQ1GLIFSSYFVYLAEKDAVN-----ESGRVEF>G<SYADALWWGVVTVTTIGYGDKVPQTWVGKT327
KCNQ2CLILASFLVYLAEKGE----------NDHF>D<TYADALWWGLITLTTIGYGDKYPQTWNGRL292
KCNQ3TLILSSFLVYLVEKDVPEVDAQGEEMKEEF>E<TYADALWWGLITLATIGYGDKTPKTWEGRL331
KCNQ4VLIFASFLVYLAEKDA----------NSDF>S<SYADSLWWGTITLTTIGYGDKTPHTWLGRV298
KCNQ5VLIFSSFLVYLVEKDA----------NKEF>S<TYADALWWGTITLTTIGYGDKTPLTWLGRL326
KCNA1GVILFSSAVYFAEAEE---------AESHF>S<SIPDAFWWAVVSMTTVGYGDMYPVTIGGKI387
KCNA10GVILFSSAVYFAEVDE---------PESHF>S<SIPDGFWWAVVTMTTVGYGDMCPTTPGGKI436
KCNA2GVILFSSAVYFAEADE---------RESQF>P<SIPDAFWWAVVSMTTVGYGDMVPTTIGGKI389
KCNA3GVILFSSAVYFAEADD---------PTSGF>S<SIPDAFWWAVVTMTTVGYGDMHPVTIGGKI459
KCNA4GVILFSSAVYFAEADE---------PTTHF>Q<SIPDAFWWAVVTMTTVGYGDMKPITVGGKI539
KCNA5GVILFSSAVYFAEADN---------QGTHF>S<SIPDAFWWAVVTMTTVGYGDMRPITVGGKI495
KCNA6GVILFSSAVYFAEADD---------DDSLF>P<SIPDAFWWAVVTMTTVGYGDMYPMTVGGKI437
KCNA7GVVLFSSAVYFAEVDR---------VDSHF>T<SIPESFWWAVVTMTTVGYGDMAPVTVGGKI373
KCNB1GIMIFSSLVFFAEKDE---------DDTKF>K<SIPASFWWATITMTTVGYGDIYPKTLLGKI392
KCNB2GIMIFSSLVFFAEKDE---------DATKF>T<SIPASFWWATITMTTVGYGDIYPKTLLGKI396
KCNC1GVLIFATMIYYAERIGAQPNDPSASEHTHF>K<NIPIGFWWAVVTMTTLGYGDMYPQTWSGML415
KCNC2GVLIFATMIYYAERVGAQPNDPSASEHTQF>K<NIPIGFWWAVVTMTTLGYGDMYPQTWSGML452
KCNC3GVLIFATMIYYAERIGADPDDILGSNHTYF>K<NIPIGFWWAVVTMTTLGYGDMYPKTWSGML518
KCNC4GVLIFATMIYYAERIGARPSDPRGNDHTDF>K<NIPIGFWWAVVTMTTLGYGDMYPKTWSGML451
KCND1AIIIFATVMFYAEKGT---------NKTNF>T<SIPAAFWYTIVTMTTLGYGDMVPSTIAGKI387
KCND2AIIIFATVMFYAEKGS---------SASKF>T<SIPAAFWYTIVTMTTLGYGDMVPKTIAGKI385
KCND3AIIIFATVMFYAEKGS---------SASKF>T<SIPASFWYTIVTMTTLGYGDMVPKTIAGKI382
KCNF1GIFVFSALGYTMEQSH---------PETLF>K<SIPQSFWWAIITMTTVGYGDIYPKTTLGKL385
KCNG1AIALFAPLLYVIENEM-----A---DSPEF>T<SIPACYWWAVITMTTVGYGDMVPRSTPGQV439
KCNG2AMALFAPLVHLAEREL-----G---ARRDF>S<SVPASYWWAVISMTTVGYGDMVPRSLPGQV384
KCNG3AMAIFSALSQLLEHGL-----DLETSNKDF>T<SIPAACWWVIISMTTVGYGDMYPITVPGRI388
KCNG4AITLFSPLVYVAEKES-----G---RVLEF>T<SIPASYWWAIISMTTVGYGDMVPRSVPGQM433
KCNS1GVSVFSGVAYTAEKEE----------DVGF>N<TIPACWWWGTVSMTTVGYGDVVPVTVAGKL436
KCNS2GISIFSVVAYTIEKEE----------NEGL>A<TIPACWWWATVSMTTVGYGDVVPGTTAGKL389
KCNS3GISIFSVLIYSVEKDD---------HTSSL>T<SIPICWWWATISMTTVGYGDTHPVTLAGKL385
KCNV1GISIFSTVEYFAEQSI---------PDTTF>T<SVPCAWWWATTSMTTVGYGDIRPDTTTGKI407
KCNV2GIFTFSAAVYSVEHDV---------PSTNF>T<TIPHSWWWAAVSISTVGYGDMYPETHLGRF472
cons                              > <                              

See full Alignment of Paralogues


Known Variants in KCNQ1

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.G297Sc.889G>A Putative BenignSIFT: tolerated
Polyphen: benign
ReportsPutative Benign Ethnic differences in cardiac potassium channel variants: implications for genetic susceptibility to sudden cardiac death and genetic testing for congenital long QT syndrome. Mayo Clin Proc. 2003 78(12):1479-87. 14661677
Putative Benign Genetic testing for long-QT syndrome: distinguishing pathogenic mutations from benign variants. Circulation. 2009 120(18):1752-60. 19841300
p.G297Rc.889G>C Putative BenignSIFT:
Polyphen:
p.G297Dc.890G>A Putative BenignSIFT:
Polyphen: