Titin Variants in Dilated Cardiomyopathy

TTN Transcript / Exon Structure & Truncating Variants in Cardiomyopathy Studies

Titin - Exon 142

Details for Exon 142 of the Titin gene - Sequence Coordinates, Associated Transcripts, Functional Data, Truncating Variants and Sequence.

The exon number is based on the LRG numbering, as recommended for clinical reporting.

Coordinates

The genomic coordinates of HG19 and Locus Reference Genomic (LRG) and the CDS coordinates of the Titin meta-transcript for exon 142 are displayed below.

HG19 Genomic		Locus Reference Genomic		Meta-Transcript
Start	End	Start	End	Start	End
179,544,409	179,544,326	156,121	156,204	33,581	33,664

Transcripts

Exon 142 occurs in the following Titin transcripts (the number indicates the exon rank of exon 142 in each transcript).

META	N2BA	N2B	N2A	NOVEX-1	NOVEX-2	NOVEX-3
141	139	-	138	-	-	-

Functional Data

Region: This exon occurs in the I-band region of the titin protein.

Domains: This exon codes for the following domain(s) - PEVK10.

PSI: The "proportion spliced-in" (an estimate of the percentage of TTN transcripts that incorporate this exon based on RNAseq data) is 1% in DCM (LV tissue of 84 end-stage patients) and 6% in GTEx (LV tissue of 105 samples from Genotype-Tissue Expression project). (See Ref. 1 for details)

Symmetry: This exon is symmetric, i.e. the length of the exon is a multiple of three and therefore removal of it will not alter the reading frame.

References
1. A. M. Roberts, J. S. Ware, D. S. Herman et al. Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease. Sci. Transl. Med. 7, 270ra6 (2015).

Truncating Variants

No TTN truncating variants affecting this exon have been described in major published studies.

Sequence

Size of Exon: 84 bases Ensembl ID: ENSE00002515886

TGCCTGAGGTACCCAGGAAACCTGTTCCAGAAGAGAAGAAACCTGTTCCTGTTCCCAAGAAGAAGGAAGCTCCACCGGCAAAAG

ATGC = coding sequence, ATGC = non-coding sequence