CLCNKA variants in ExAC


The table below lists the CLCNKA variants found in the ExAC population database. Click on each variant for more details, including presence in the 1000 Genomes and Exome Sequencing Project databases, a breakdown by ethnic class and the variant's role in inherited cardiac disease. Use the form below to customise the variant selection. The table can be sorted by variant location, variant type or ExAC frequency.




No. Genomic coord. Variant (CDS) Variant (Protein) Variant Type ExAC frequencyPopulations*
1. 16358932 c.1846-6T>C splice site 0.68822217
2. 16351275 c.247A>G p.R83G missense 0.56363892
3. 16356501 c.1339G>A p.A447T missense 0.56122229
4. 16354590 c.944A>T p.Y315F missense 0.20701425
5. 16360137 c.2048C>T p.P683L missense 0.07955113
6. 16357147 c.1600C>T p.R534W missense 0.07875388
7. 16356522 c.1360A>G p.T454A missense 0.07782373
8. 16356531 c.1369G>A p.V457I missense 0.07741480
9. 16355638 c.1071T>A p.H357Q missense 0.07668914
10. 16355614 c.1054-7G>A splice site 0.06231763
11. 16349137 c.23G>A p.R8H missense 0.03833675
12. 16355287 c.1000C>G p.L334V missense 0.02241712
13. 16355613 c.1054-8C>T splice site 0.00259717
14. 16357159 c.1612C>T p.R538C missense 0.00256389
15. 16354581 c.935C>T p.T312I missense 0.00243094
16. 16355249 c.969-7C>G splice site 0.00236939
17. 16358348 c.1756+10T>C splice site 0.00231481
18. 16355800 c.1227+6delC splice site 0.00224558
19. 16349224 c.100+10A>G splice site 0.00215464
20. 16350417 c.223G>T p.V75F missense 0.00201204
21. 16353020 c.499-11_499-10insC splice site 0.00174361
22. 16358248 c.1666A>G p.T556A missense 0.00142658
23. 16359717 c.1982G>A p.R661Q missense 0.00135206
24. 16359674 c.1939C>T p.L647F missense 0.00131915
25. 16351338 c.310G>A p.V104I missense 0.00117942
26. 16356971 c.1424C>T p.S475L missense 0.00114958
27. 16354505 c.867-8C>T splice site 0.00092275
28. 16349110 c.-5G>A splice site 0.00089829
29. 16351266 c.238T>G p.W80G missense 0.00070329
30. 16350315 c.121C>A p.Q41K missense 0.00069340
31. 16350328 c.134G>A p.R45H missense 0.00059406
32. 16356535 c.1373C>A p.T458N missense 0.00054935
33. 16355714 c.1147G>T p.D383Y missense 0.00052208
34. 16354556 c.910C>T p.R304X nonsense 0.00046964
35. 16357167 c.1620C>T p.I540I splice site 0.00044322
36. 16358289 c.1707delG p.Val570LeufsTer2 frameshift 0.00036496
37. 16355763 c.1196T>A p.F399Y missense 0.00036467
38. 16357097 c.1550C>T p.P517L missense 0.00034334
39. 16354586 c.940C>G p.R314G missense 0.00029666
40. 16356950 c.1409-6C>T splice site 0.00025935
41. 16357117 c.1570A>G p.I524V missense 0.00022624
42. 16358742 c.1801C>T p.Q601X nonsense 0.00018840
43. 16349169 c.55C>T p.Q19X nonsense 0.00017726
44. 16357148 c.1601G>A p.R534Q missense 0.00015016
45. 16352753 c.498+11G>C splice site 0.00013239
46. 16353276 c.655+6_655+7insC splice site 0.00012503
47. 16357101 c.1554_1556delCTT p.Phe519del inframe 0.00011723
48. 16349203 c.89G>A p.R30Q missense 0.00010881
49. 16349102 c.-7-6C>T splice site 0.00010510
50. 16349188 c.74G>A p.C25Y missense 0.00009909
51. 16355670 c.1103C>T p.A368V missense 0.00009168
52. 16349146 c.32T>C p.F11S missense 0.00008587
53. 16353931 c.781+1G>C essential splice site 0.00008358
54. 16353256 c.641C>G p.A214G missense 0.00008309
55. 16358267 c.1685C>T p.T562M missense 0.00008294
56. 16356498 c.1336G>A p.V446I missense 0.00008275
57. 16355251 c.969-5C>A splice site 0.00008255
58. 16358690 c.1757-8C>T splice site 0.00007664
59. 16357001 c.1454C>T p.A485V missense 0.00007562
60. 16358308 c.1726G>A p.V576M missense 0.00007467
61. 16358728 c.1787G>A p.R596K missense 0.00006829
62. 16358297 c.1715C>T p.T572I missense 0.00006636
63. 16355246 c.969-10C>T splice site 0.00006608
64. 16355251 c.969-5C>G splice site 0.00006604
65. 16353796 c.656-9C>T splice site 0.00005833
66. 16349215 c.100+1G>T essential splice site 0.00005813
67. 16358254 c.1672C>A p.L558M missense 0.00005805
68. 16355747 c.1180C>T p.P394S missense 0.00005799
69. 16355293 c.1006G>A p.A336T missense 0.00005776
70. 16351372 c.344C>T p.T115M missense 0.00005773
71. 16349205 c.91G>A p.A31T missense 0.00005517
72. 16349200 c.86G>A p.R29H missense 0.00005332
73. 16349199 c.85C>T p.R29C missense 0.00005276
74. 16349108 c.-7G>A splice site 0.00005044
75. 16357036 c.1489C>T p.H497Y missense 0.00005019
76. 16357167 c.1620C>A splice site 0.00005018
77. 16358314 c.1732G>A p.E578K missense 0.00004977
78. 16358975 c.1883C>T p.T628M missense 0.00004970
79. 16355309 c.1022C>T p.P341L missense 0.00004953
80. 16349181 c.67G>A p.G23S missense 0.00004775
81. 16349179 c.65G>A p.W22X nonsense 0.00004740
82. 16349122 c.8A>C p.E3A missense 0.00004699
83. 16349136 c.22C>T p.R8C missense 0.00004434
84. 16349139 c.25delG p.Glu9ArgfsTer8 frameshift 0.00004352
85. 16349154 c.40G>A p.D14N missense 0.00004308
86. 16349160 c.46G>A p.V16M missense 0.00004279
87. 16355351 c.1053+11C>T splice site 0.00004132
88. 16350428 c.229+5C>T splice site 0.00004123
89. 16359717 c.1982G>C p.R661P missense 0.00004122
90. 16356268 c.1270G>A p.G424R missense 0.00004120
91. 16358754 c.1813G>C p.A605P missense 0.00003433
92. 16357048 c.1501G>A p.V501M missense 0.00003350
93. 16353903 c.754C>T p.L252F missense 0.00003325
94. 16355750 c.1183C>T p.R395W missense 0.00003314
95. 16353209 c.594delC p.Asn198LysfsTer98 frameshift 0.00003314
96. 16351259 c.231A>G splice site 0.00003311
97. 16358932 c.1846-6_1846-5insAACTCTTCCCCACC splice site 0.00003306
98. 16353061 c.529G>A p.A177T missense 0.00003306
99. 16359737 c.2002G>A p.V668M missense 0.00003299
100. 16350415 c.221T>C p.V74A missense 0.00003298
101. 16350363 c.169G>A p.G57R missense 0.00003298
102. 16356277 c.1279A>G p.M427V missense 0.00003296
103. 16358787 c.1845+1G>T essential splice site 0.00002619
104. 16358775 c.1834C>G p.P612A missense 0.00002599
105. 16354379 c.845_847delTCT p.Phe285del inframe 0.00002589
106. 16357073 c.1526A>G p.N509S missense 0.00002525
107. 16356552 c.1390G>A p.G464R missense 0.00002512
108. 16357022 c.1475C>G p.T492S missense 0.00002511
109. 16357160 c.1613G>A p.R538H missense 0.00002507
110. 16353927 c.778C>T p.Q260X nonsense 0.00002504
111. 16358197 c.1623-8G>A splice site 0.00002493
112. 16356514 c.1352G>A p.G451D missense 0.00002489
113. 16355708 c.1141G>T p.E381X nonsense 0.00002487
114. 16353852 c.703G>T p.D235Y missense 0.00002485
115. 16353034 c.502C>T p.P168S missense 0.00002485
116. 16353850 c.701G>C p.R234P missense 0.00002485
117. 16355751 c.1184G>A p.R395Q missense 0.00002485
118. 16355338 c.1051C>T p.R351W missense 0.00002477
119. 16351300 c.272_273insC p.Arg92ProfsTer101 frameshift 0.00002475
120. 16355285 c.998T>G p.L333W missense 0.00002475
121. 16355293 c.1006G>C p.A336P missense 0.00002475
122. 16350409 c.215G>T p.G72V missense 0.00002474
123. 16350366 c.172G>T p.V58L missense 0.00002474
124. 16354526 c.880G>T p.V294F missense 0.00002472
125. 16352630 c.386T>C p.M129T missense 0.00002471
126. 16356951 c.1409-5G>A splice site 0.00001728
127. 16356951 c.1409-5G>T splice site 0.00001728
128. 16354383 c.849_850insT p.Val286CysfsTer38 frameshift 0.00001724
129. 16358760 c.1819C>T p.P607S missense 0.00001720
130. 16356965 c.1418C>A p.A473D missense 0.00001707
131. 16358720 c.1779C>G p.I593M missense 0.00001705
132. 16356567 c.1405G>T p.A469S missense 0.00001688
133. 16357024 c.1477G>A p.G493S missense 0.00001674
134. 16356555 c.1393G>A p.G465R missense 0.00001674
135. 16353921 c.772A>G p.S258G missense 0.00001666
136. 16358290 c.1708G>T p.V570F missense 0.00001660
137. 16358342 c.1756+4C>T splice site 0.00001660
138. 16355697 c.1130C>T p.P377L missense 0.00001660
139. 16353822 c.673G>A p.E225K missense 0.00001659
140. 16358251 c.1669A>G p.T557A missense 0.00001659
141. 16358249 c.1667C>A p.T556N missense 0.00001659
142. 16359018 c.1926C>A p.H642Q missense 0.00001658
143. 16355711 c.1144C>T p.L382F missense 0.00001658
144. 16358980 c.1888delC p.Pro630GlnfsTer2 frameshift 0.00001657
145. 16358993 c.1901C>T p.T634M missense 0.00001657
146. 16358953 c.1861A>G p.I621V missense 0.00001656
147. 16356475 c.1313G>A p.R438H missense 0.00001655
148. 16356471 c.1309G>A p.G437R missense 0.00001655
149. 16356496 c.1334C>T p.A445V missense 0.00001655
150. 16356453 c.1298-7T>C splice site 0.00001655
151. 16356474 c.1312C>T p.R438C missense 0.00001655
152. 16355251 c.969-5C>T splice site 0.00001651
153. 16352745 c.498+3A>G splice site 0.00001651
154. 16351397 c.358+11G>A splice site 0.00001650
155. 16355272 c.985G>A p.A329T missense 0.00001650
156. 16351302 c.274C>T p.R92W missense 0.00001650
157. 16354610 c.964A>G p.T322A missense 0.00001650
158. 16359726 c.1991C>T p.A664V missense 0.00001649
159. 16359678 c.1943T>C p.F648S missense 0.00001649
160. 16354590 c.944A>G p.Y315C missense 0.00001649
161. 16352716 c.472G>A p.G158S missense 0.00001648
162. 16354557 c.911G>A p.R304Q missense 0.00001648
163. 16354526 c.880G>A p.V294I missense 0.00001648
164. 16356294 c.1296_1297insG p.Ala434SerfsTer17 frameshift 0.00001648
165. 16354543 c.897C>G p.Tyr299Ter nonsense 0.00001648
166. 16352627 c.383C>T p.T128I missense 0.00001647
167. 16358791 c.1845+5T>G splice site 0.00000879
168. 16358787 c.1845+1G>A essential splice site 0.00000873
169. 16358785 c.1844A>C p.Q615P missense 0.00000871
170. 16356949 c.1409-7C>T splice site 0.00000865
171. 16358764 c.1823C>T p.P608L missense 0.00000861
172. 16358752 c.1811A>G p.Q604R missense 0.00000858
173. 16356958 c.1411G>C p.A471P missense 0.00000858
174. 16358746 c.1805C>T p.A602V missense 0.00000856
175. 16358721 c.1780G>A p.V594M missense 0.00000853
176. 16358716 c.1775G>C p.G592A missense 0.00000853
177. 16356970 c.1423T>G p.S475A missense 0.00000852
178. 16358696 c.1757-2A>G essential splice site 0.00000852
179. 16358691 c.1757-7T>A splice site 0.00000852
180. 16358694 c.1757-4C>G splice site 0.00000852
181. 16358700 c.1759_1760insC p.Gln588ProfsTer19 frameshift 0.00000852
182. 16356973 c.1426G>A p.G476R missense 0.00000850
183. 16356979 c.1432G>A p.V478M missense 0.00000847
184. 16356982 c.1435A>G p.T479A missense 0.00000846
185. 16357061 c.1514T>C p.V505A missense 0.00000845
186. 16357060 c.1513G>A p.V505M missense 0.00000843
187. 16356991 c.1444A>G p.I482V missense 0.00000843
188. 16357072 c.1525A>C p.N509H missense 0.00000842
189. 16357052 c.1505T>C p.L502P missense 0.00000842
190. 16357075 c.1528G>A p.A510T missense 0.00000841
191. 16356561 c.1399G>A p.A467T missense 0.00000840
192. 16353937 c.781+7C>T splice site 0.00000838
193. 16357040 c.1493C>T p.A498V missense 0.00000837
194. 16357174 c.1622+5G>T splice site 0.00000837
195. 16357024 c.1477G>C p.G493R missense 0.00000837
196. 16357031 c.1484T>G p.I495R missense 0.00000837
197. 16357112 c.1565G>A p.G522D missense 0.00000837
198. 16357022 c.1475C>T p.T492I missense 0.00000837
199. 16357168 c.1621G>A p.G541S missense 0.00000836
200. 16357172 c.1622+3G>T splice site 0.00000836
201. 16360098 c.2017-8T>C splice site 0.00000835
202. 16353929 c.780G>C p.Q260H missense 0.00000835
203. 16357150 c.1603A>G p.I535V missense 0.00000834
204. 16357145 c.1598C>T p.P533L missense 0.00000834
205. 16360104 c.2017-2A>C essential splice site 0.00000834
206. 16357152 c.1605T>G p.I535M missense 0.00000834
207. 16353923 c.774C>G p.S258R missense 0.00000834
208. 16357148 c.1601G>T p.R534L missense 0.00000834
209. 16360109 c.2020A>C p.K674Q missense 0.00000833
210. 16353918 c.769A>G p.N257D missense 0.00000833
211. 16355670 c.1103C>G p.A368G missense 0.00000833
212. 16360143 c.2054C>T p.A685V missense 0.00000833
213. 16353799 c.656-6C>A splice site 0.00000833
214. 16355799 c.1227+5G>T splice site 0.00000832
215. 16353910 c.761C>A p.A254E missense 0.00000832
216. 16355796 c.1227+2T>C essential splice site 0.00000831
217. 16353901 c.752G>C p.R251P missense 0.00000831
218. 16353807 c.658G>C p.V220L missense 0.00000831
219. 16358206 c.1624T>C p.S542P missense 0.00000831
220. 16358199 c.1623-6C>T splice site 0.00000831
221. 16353252 c.637_638delTT p.Phe213CysfsTer68 frameshift 0.00000831
222. 16356531 c.1369_1375delGTTACCA p.Val457IlefsTer20 frameshift 0.00000831
223. 16355795 c.1227+1G>A essential splice site 0.00000831
224. 16353899 c.750C>G p.F250L missense 0.00000831
225. 16358339 c.1756+1G>A essential splice site 0.00000830
226. 16358331 c.1749G>C p.E583D missense 0.00000830
227. 16353874 c.725C>T p.A242V missense 0.00000830
228. 16358300 c.1718C>A p.S573Y missense 0.00000830
229. 16358333 c.1751G>A p.S584N missense 0.00000830
230. 16353885 c.736G>C p.G246R missense 0.00000830
231. 16358212 c.1630C>A p.H544N missense 0.00000830
232. 16353817 c.668G>T p.S223I missense 0.00000830
233. 16355778 c.1211T>A p.F404Y missense 0.00000830
234. 16353874 c.725C>G p.A242G missense 0.00000830
235. 16353822 c.673G>T p.E225X nonsense 0.00000830
236. 16358342 c.1756+4C>A splice site 0.00000830
237. 16359014 c.1922T>C p.L641S missense 0.00000829
238. 16351251 c.230-7T>A splice site 0.00000829
239. 16355763 c.1196T>G p.F399C missense 0.00000829
240. 16353828 c.679A>G p.M227V missense 0.00000829
241. 16353863 c.714G>C p.R238S missense 0.00000829
242. 16355708 c.1141G>A p.E381K missense 0.00000829
243. 16355771 c.1204C>A p.L402I missense 0.00000829
244. 16359019 c.1927C>A p.Q643K missense 0.00000829
245. 16353865 c.716G>T p.G239V missense 0.00000829
246. 16358270 c.1688C>T p.P563L missense 0.00000829
247. 16359022 c.1929+1G>A essential splice site 0.00000829
248. 16358242 c.1660A>G p.S554G missense 0.00000829
249. 16359016 c.1924C>T p.H642Y missense 0.00000829
250. 16353866 c.717_718insT p.Phe241LeufsTer41 frameshift 0.00000829
251. 16356507 c.1345C>T p.P449S missense 0.00000829
252. 16353834 c.685T>C p.S229P missense 0.00000828
253. 16355731 c.1164G>T p.W388C missense 0.00000828
254. 16356458 c.1298-2A>C essential splice site 0.00000828
255. 16353040 c.508G>C p.V170L missense 0.00000828
256. 16353038 c.506T>C p.F169S missense 0.00000828
257. 16356452 c.1298-8G>A splice site 0.00000828
258. 16355738 c.1171T>C p.W391R missense 0.00000828
259. 16356492 c.1330C>T p.L444F missense 0.00000828
260. 16353835 c.686C>T p.S229F missense 0.00000828
261. 16353040 c.508G>T p.V170L missense 0.00000828
262. 16356452 c.1298-8G>C splice site 0.00000828
263. 16356474 c.1312C>A p.R438S missense 0.00000828
264. 16355748 c.1181C>T p.P394L missense 0.00000828
265. 16355722 c.1155G>C p.Q385H missense 0.00000828
266. 16353040 c.508G>A p.V170M missense 0.00000828
267. 16353035 c.503C>T p.P168L missense 0.00000828
268. 16356465 c.1303G>T p.A435S missense 0.00000828
269. 16353856 c.707A>G p.Y236C missense 0.00000828
270. 16353044 c.512A>G p.H171R missense 0.00000827
271. 16350288 c.101-7G>A splice site 0.00000827
272. 16351264 c.236A>G p.Q79R missense 0.00000827
273. 16353076 c.544C>G p.R182G missense 0.00000827
274. 16356477 c.1315C>T p.L439F missense 0.00000827
275. 16351273 c.245A>T p.Y82F missense 0.00000827
276. 16353103 c.571C>G p.P191A missense 0.00000827
277. 16350306 c.112T>G p.W38G missense 0.00000826
278. 16355339 c.1052G>A p.R351Q missense 0.00000826
279. 16359758 c.2016+7G>A splice site 0.00000826
280. 16355342 c.1053+2T>C essential splice site 0.00000826
281. 16359759 c.2016+8G>C splice site 0.00000826
282. 16354614 c.968G>C p.S323T missense 0.00000826
283. 16350303 c.109G>C p.E37Q missense 0.00000826
284. 16355348 c.1053+8G>A splice site 0.00000826
285. 16351357 c.329T>C p.F110S missense 0.00000825
286. 16351295 c.267C>A p.H89Q missense 0.00000825
287. 16350334 c.140G>T p.G47V missense 0.00000825
288. 16354604 c.958C>G p.L320V missense 0.00000825
289. 16351386 c.358G>A p.G120S missense 0.00000825
290. 16359725 c.1990G>A p.A664T missense 0.00000825
291. 16350396 c.202A>G p.N68D missense 0.00000825
292. 16355284 c.997T>A p.L333M missense 0.00000825
293. 16359659 c.1930-6A>T splice site 0.00000825
294. 16355315 c.1028G>C p.G343A missense 0.00000825
295. 16351316 c.288G>T p.W96C missense 0.00000825
296. 16350321 c.127G>A p.V43M missense 0.00000825
297. 16350408 c.214G>A p.G72R missense 0.00000825
298. 16355321 c.1034G>A p.G345D missense 0.00000825
299. 16350393 c.199A>G p.M67V missense 0.00000825
300. 16355252 c.969-4A>G splice site 0.00000825
301. 16351354 c.326G>A p.G109D missense 0.00000825
302. 16351389 c.358+3G>A splice site 0.00000825
303. 16350372 c.178A>T p.M60L missense 0.00000825
304. 16350430 c.229+7C>T splice site 0.00000825
305. 16359729 c.1994T>C p.V665A missense 0.00000825
306. 16351282 c.254T>C p.I85T missense 0.00000825
307. 16354612 c.966T>G splice site 0.00000825
308. 16350429 c.229+6T>C splice site 0.00000825
309. 16350327 c.133C>T p.R45C missense 0.00000825
310. 16351372 c.344C>A p.T115K missense 0.00000825
311. 16350334 c.140G>A p.G47E missense 0.00000825
312. 16350420 c.226C>T p.R76X nonsense 0.00000825
313. 16351390 c.358+4A>C splice site 0.00000825
314. 16350388 c.194A>G p.Y65C missense 0.00000825
315. 16352675 c.431T>C p.F144S missense 0.00000824
316. 16359687 c.1952T>C p.L651S missense 0.00000824
317. 16354542 c.896A>T p.Y299F missense 0.00000824
318. 16359714 c.1979C>T p.S660L missense 0.00000824
319. 16354584 c.938A>C p.N313T missense 0.00000824
320. 16354515 c.869G>C p.G290A missense 0.00000824
321. 16352598 c.359-5C>G splice site 0.00000824
322. 16356300 c.1297+5G>A splice site 0.00000824
323. 16356269 c.1271_1273delGGT p.Gly424_Tyr425delinsAsp inframe 0.00000824
324. 16352689 c.445G>T p.V149L missense 0.00000824
325. 16359692 c.1957C>T p.L653F missense 0.00000824
326. 16354587 c.941G>C p.R314P missense 0.00000824
327. 16352723 c.479C>A p.T160N missense 0.00000824
328. 16354572 c.926_928delTCA p.Ile310del inframe 0.00000824
329. 16359716 c.1981C>T p.R661W missense 0.00000824
330. 16352636 c.392C>T p.A131V missense 0.00000824
331. 16352615 c.371C>T p.P124L missense 0.00000824
332. 16354521 c.875G>A p.C292Y missense 0.00000824
333. 16354509 c.867-4G>A splice site 0.00000824
334. 16352690 c.446T>A p.V149E missense 0.00000824
335. 16352601 c.359-2A>C essential splice site 0.00000824
336. 16356223 c.1228-3C>T splice site 0.00000824
337. 16359697 c.1962G>T p.Q654H missense 0.00000824
338. 16354587 c.941G>A p.R314Q missense 0.00000824
339. 16354557 c.911G>C p.R304P missense 0.00000824
340. 16356278 c.1280T>C p.M427T missense 0.00000824
341. 16352663 c.419A>G p.D140G missense 0.00000824
342. 16354533 c.887G>A p.S296N missense 0.00000824
343. 16356298 c.1297+3delG essential splice site 0.00000824
344. 16356297 c.1297+2T>A essential splice site 0.00000824
345. 16352608 c.364delG p.Gly122GlufsTer5 frameshift 0.00000824
346. 16352711 c.467C>T p.A156V missense 0.00000824
347. 16354574 c.928A>C p.I310L missense 0.00000824
348. 16356298 c.1297+3G>T splice site 0.00000824
349. 16359707 c.1972G>A p.V658M missense 0.00000824
350. 16354523 c.877G>A p.G293S missense 0.00000824
351. 16356269 c.1271G>C p.G424A missense 0.00000824

* This highlights the relative frequency of the variant in the ExAC populations - Non-Finnish European, African, East Asian, South Asian, American and Finnish. Higher frequencies are denoted by darker shades of green, variants absent in a population are coloured light gray.

Genomic coordinates refer to the GRCh37 release of the human genome.